Cables, cheap cables have bad shielding so that is a potential noise source.
Have you checked the battery in your pedal, low batteries can get noisy before they die.
Another thing to try is shielding. You can get copper foil (or nickle paint) for lining the internal cavity of your strat and this will cancel noise.
My instructors page and www.studiotrax.net for all things recording.
my toons Brought to you by Dr BadGAS
my toons Brought to you by Dr BadGAS