maybe i'm looking at the obvious here, but what about the ibanez RG series? it seems to fit your criteria.

and they do have models with flamed tops.

edit: i just noticed the models that are flamed don't have the middle single coil pickup...but if i'm not mistaken, i believe the models that have two pickups still have a 5 way switch and a certain coil-tapped setup for the three middle positions?