I dident really find the cause of the problem, i still think it sounds a bit out of tune even though 2 people have now looked at it. But i don't know if it's just me that has become way to sensitive. You can take a listen to the guitar here. Let me know what you think.
https://www.youtube.com/watch?v=Sr43xzWqxvo&list=UUdvo8i_aYTdE2d3D5DSwX6Q