Hmm...I guess I'm not really sure where you want this post to go. I can say it is important to remember that a couple notes don't have a sharp or flat between them the same way as the rest (or, put another way, there is only one half step between the basic lettered notes.) These notes that are missing a half-step between them are E and F, and between B and C.

To illustrate: we have the lettered notes, A B C D E F and G. Most of these are an entire step apart (2 frets.)

Between A and B, there is A# or Bb
Between C and D, C# or Db
D and E have D# or Eb
F and G have F# or Gb.

However, there are no notes between E-F and B-C, meaning these pairs are only 1 fret apart.

So, this means that E# is actually just a basic F, and Fb is just a basic E.