Originally Posted by: greyghoast17... how can I when playing each arpgeggio or (scale) identify which note is 1 or 3 or b7, or #5?[/quote]
You should familiarize yourself with the basic major & minor scale formulas & the fretboard patterns they form across the guitar.

http://www.guitartricks.com/tutorial.php?input=453
http://www.guitartricks.com/tutorial.php?input=887

Next you can learn to visualize the basic triads & inversions across the fretboard.

http://www.guitartricks.com/tutorial.php?input=148
http://www.guitartricks.com/tutorial.php?input=730
http://www.guitartricks.com/tutorial.php?input=731
http://www.guitartricks.com/tutorial.php?input=733
http://www.guitartricks.com/tutorial.php?input=734

In this one I spend some time in lessons showing how to arpeggiate extended chords in order to solo in a jazz context.

http://www.guitartricks.com/tutorial.php?input=1205

Finally, this one is about visualizing all possible intervals in multiple positions.

http://www.guitartricks.com/tutorial.php?input=462
[QUOTE=greyghoast17] ... dont some arpeggio patterns begin on a note other than 1 if your playing the same notes in different shapes?